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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3fbc TYD Nucleoside diphosphate kinase 2.7.4.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3fbc TYDNucleoside diphosphate kinase 2.7.4.6 0.900
1ndc TYDNucleoside diphosphate kinase, cytosolic 2.7.4.6 0.678
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.662
1eqg IBPProstaglandin G/H synthase 1 1.14.99.1 0.660
1u5a BIKL-lactate dehydrogenase 1.1.1.27 0.660
4nhm UN9Prolyl 3,4-dihydroxylase TPA1 1.14.11 0.659
3lzj CTPDNA-directed DNA polymerase / 0.656
4h8i 11WGlutamate receptor ionotropic, kainate 2 / 0.656
3ez3 ZOLFarnesyl pyrophosphate synthase, putative / 0.655
4m3x ATPDNA-directed DNA polymerase / 0.654
4dtm DCPDNA-directed DNA polymerase / 0.653
4fjj TTPDNA-directed DNA polymerase / 0.653
4fjl DGTDNA-directed DNA polymerase / 0.653
4fjm DCPDNA-directed DNA polymerase / 0.653
4qi9 MTXDihydrofolate reductase / 0.652
2d3a ADPGlutamine synthetase root isozyme 3 6.3.1.2 0.651
4dtx TTPDNA-directed DNA polymerase / 0.651
4fjh DGTDNA-directed DNA polymerase / 0.651
4l9k EHFSerum albumin / 0.650