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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f90 FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f90 FMNFlavodoxin / 1.182
3f6s FMNFlavodoxin / 0.981
1xyv FMNFlavodoxin / 0.904
1akr FMNFlavodoxin / 0.896
1azl FMNFlavodoxin / 0.894
1wsb FMNFlavodoxin / 0.887
1j9g FMNFlavodoxin / 0.869
1j8q FMNFlavodoxin / 0.866
2fx2 FMNFlavodoxin / 0.850
1c7f FMNFlavodoxin / 0.847
1akw FMNFlavodoxin / 0.838
2v5u FMNFlavodoxin / 0.810
3f6r FMNFlavodoxin / 0.794
5tgz FMNCannabinoid receptor 1 / 0.791
4fx2 FMNFlavodoxin / 0.781
5xra FMNCannabinoid receptor 1 / 0.779
1xyy FMNFlavodoxin / 0.776
5xr8 FMNCannabinoid receptor 1 / 0.764
1fx1 FMNFlavodoxin / 0.751
1aku FMNFlavodoxin / 0.750
1ahn FMNFlavodoxin 1 / 0.749
3kaq FMNFlavodoxin / 0.745
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.737
5fx2 FMNFlavodoxin / 0.737
1czn FMNFlavodoxin / 0.734
3n39 FMNProtein NrdI / 0.728
3esz FMNFlavodoxin / 0.726
2v5v FMNFlavodoxin / 0.723
3kap FMNFlavodoxin / 0.721
1ofv FMNFlavodoxin / 0.718
3n3b FMNProtein NrdI / 0.718
2fcr FMNFlavodoxin / 0.704
2bf4 FMNNADPH--cytochrome P450 reductase / 0.701
4y7c FMNNADPH--cytochrome P450 reductase / 0.697
1zwl FMNNAD(P)H dehydrogenase (quinone) 1.6.5.2 0.692
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.691
4yao FMNNADPH--cytochrome P450 reductase / 0.688
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.679
2mok FMNFlavodoxin 1 / 0.674
2q9u FMNA-type flavoprotein / 0.674
5eai FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.672
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.671
2ohj FMNType A flavoprotein FprA 1 0.669
1j9z FMNNADPH--cytochrome P450 reductase / 0.668
3n3a FMNProtein NrdI / 0.668
1fue FMNFlavodoxin / 0.667
3esy FMNFlavodoxin / 0.667
3i99 FADUDP-N-acetylenolpyruvoylglucosamine reductase / 0.666
2ohi FMNType A flavoprotein FprA 1 0.665
3qe2 FMNNADPH--cytochrome P450 reductase / 0.665
4dy4 FMNNAD(P)H dehydrogenase (quinone) / 0.665
4oxx FMNCindoxin / 0.665
3qfr FMNNADPH--cytochrome P450 reductase / 0.664
3zho FMNNAD(P)H dehydrogenase (quinone) / 0.664
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.664
3kru FMNNADH:flavin oxidoreductase/NADH oxidase / 0.663
3mpi FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.663
3rpe FADPutative modulator of drug activity / 0.663
5a8a FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.663
2b3d FADModulator of drug activity B / 0.661
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.661
1yob FMNFlavodoxin 2 / 0.659
1ja0 FMNNADPH--cytochrome P450 reductase / 0.658
1bu5 RBFFlavodoxin / 0.656
1ycg FMNNitric oxide reductase 1 0.656
4bmp FMNProtein NrdI / 0.655
4ttc FMNIodotyrosine deiodinase 1 / 0.655
1qr2 FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.654
2zry FNRIsopentenyl-diphosphate delta-isomerase / 0.654
5a4k FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.654
1ja1 FMNNADPH--cytochrome P450 reductase / 0.651
3d72 FADVivid PAS protein VVD / 0.651
3ojx FMNNADPH--cytochrome P450 reductase / 0.651
4yco FMNtRNA-dihydrouridine(16) synthase / 0.651