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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f7u AG4 Carbonic anhydrase 4 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f7u AG4Carbonic anhydrase 4 4.2.1.1 0.990
3f7b AG5Carbonic anhydrase 4 4.2.1.1 0.822
4m2v BZ1Carbonic anhydrase 2 4.2.1.1 0.714
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.710
1a42 BZUCarbonic anhydrase 2 4.2.1.1 0.702
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.697
3hku TORCarbonic anhydrase 2 4.2.1.1 0.692
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.689
1zsb AZMCarbonic anhydrase 2 4.2.1.1 0.688
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.687
1bnu AL3Carbonic anhydrase 2 4.2.1.1 0.683
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.683
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.681
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.680
3dcs MZMCarbonic anhydrase 2 4.2.1.1 0.679
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.678
3b4f TUOCarbonic anhydrase 2 4.2.1.1 0.677
1okn STBCarbonic anhydrase 2 4.2.1.1 0.674
3sbh E65Carbonic anhydrase 2 4.2.1.1 0.673
4kp8 E1GCarbonic anhydrase 12 4.2.1.1 0.672
1i90 INMCarbonic anhydrase 2 4.2.1.1 0.671
4uov AZMCarbonate dehydratase / 0.671
1cnw EG1Carbonic anhydrase 2 4.2.1.1 0.668
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.668
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.667
1cny EG3Carbonic anhydrase 2 4.2.1.1 0.665
1cil ETSCarbonic anhydrase 2 4.2.1.1 0.664
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.663
3mho J43Carbonic anhydrase 2 4.2.1.1 0.662
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.662
3oys OYSCarbonic anhydrase 2 4.2.1.1 0.660
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.659
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.658
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.657
1oq5 CELCarbonic anhydrase 2 4.2.1.1 0.657
3n3j WWVCarbonic anhydrase 2 4.2.1.1 0.657
3po6 DT9Carbonic anhydrase 2 4.2.1.1 0.657
1bnw TPDCarbonic anhydrase 2 4.2.1.1 0.656
1bnq AL4Carbonic anhydrase 2 4.2.1.1 0.654
3dd0 EZLCarbonic anhydrase 2 4.2.1.1 0.654
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.654
3igp DT7Carbonic anhydrase 2 4.2.1.1 0.652
3t84 SG6Carbonic anhydrase 2 4.2.1.1 0.652
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.652
1bn1 AL5Carbonic anhydrase 2 4.2.1.1 0.650
4m2r BZ1Carbonic anhydrase 2 4.2.1.1 0.650