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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3f6r FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3f6r FMNFlavodoxin / 1.189
1c7f FMNFlavodoxin / 1.036
3kap FMNFlavodoxin / 0.994
1j9g FMNFlavodoxin / 0.951
1xyy FMNFlavodoxin / 0.918
3f6s FMNFlavodoxin / 0.918
1azl FMNFlavodoxin / 0.907
1xyv FMNFlavodoxin / 0.888
1akr FMNFlavodoxin / 0.882
2fx2 FMNFlavodoxin / 0.879
1akw FMNFlavodoxin / 0.866
1j8q FMNFlavodoxin / 0.864
3kaq FMNFlavodoxin / 0.862
1wsb FMNFlavodoxin / 0.841
1aku FMNFlavodoxin / 0.834
5tgz FMNCannabinoid receptor 1 / 0.816
1ahn FMNFlavodoxin 1 / 0.801
3f90 FMNFlavodoxin / 0.794
2v5v FMNFlavodoxin / 0.762
1fx1 FMNFlavodoxin / 0.761
4fx2 FMNFlavodoxin / 0.744
3esz FMNFlavodoxin / 0.732
1bu5 RBFFlavodoxin / 0.719
4yao FMNNADPH--cytochrome P450 reductase / 0.719
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.718
5xra FMNCannabinoid receptor 1 / 0.717
5xr8 FMNCannabinoid receptor 1 / 0.717
5fx2 FMNFlavodoxin / 0.706
4bmo FMNProtein NrdI / 0.705
2bn4 FMNNADPH--cytochrome P450 reductase / 0.703
1czn FMNFlavodoxin / 0.689
1ofv FMNFlavodoxin / 0.689
4oxx FMNCindoxin / 0.686
2bf4 FMNNADPH--cytochrome P450 reductase / 0.685
3esy FMNFlavodoxin / 0.677
2zaf FADNitroalkane oxidase 1.7.3.1 0.674
2ohi FMNType A flavoprotein FprA 1 0.673
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.671
1qbg FADNAD(P)H dehydrogenase [quinone] 1 1.6.5.2 0.671
2vig FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.1 0.668
3qfr FMNNADPH--cytochrome P450 reductase / 0.665
2mok FMNFlavodoxin 1 / 0.662
4j8p FMNFlavodoxin / 0.660
2r96 FMNNAD(P)H dehydrogenase (quinone) / 0.658
2v5u FMNFlavodoxin / 0.656
3pfd FDAAcyl-CoA dehydrogenase FadE25 / 0.655
2hs6 FMN12-oxophytodienoate reductase 3 1.3.1.42 0.654
1rx0 FADIsobutyryl-CoA dehydrogenase, mitochondrial 1.3.99 0.653
3hgo FMN12-oxophytodienoate reductase 3 1.3.1.42 0.653
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.653
3n3a FMNProtein NrdI / 0.653
1ych FMNNitric oxide reductase 1 0.652
2qmy FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.652
3qe2 FMNNADPH--cytochrome P450 reductase / 0.651
1ycg FMNNitric oxide reductase 1 0.650
5djt FMNNPH1-2 / 0.650