Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3esy FMN Flavodoxin

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3esy FMNFlavodoxin / 1.276
3esz FMNFlavodoxin / 1.086
2v5u FMNFlavodoxin / 1.040
1ahn FMNFlavodoxin 1 / 1.002
2v5v FMNFlavodoxin / 0.978
1ofv FMNFlavodoxin / 0.959
2fx2 FMNFlavodoxin / 0.926
1czn FMNFlavodoxin / 0.881
1wsb FMNFlavodoxin / 0.866
1azl FMNFlavodoxin / 0.864
1akr FMNFlavodoxin / 0.853
1j8q FMNFlavodoxin / 0.852
1c7f FMNFlavodoxin / 0.821
4oxx FMNCindoxin / 0.795
1xyv FMNFlavodoxin / 0.794
4n82 FMNRibonucleotide reductase (NrdI family protein), putative / 0.778
1j9g FMNFlavodoxin / 0.777
1tll FMNNitric oxide synthase, brain 1.14.13.39 0.772
5xra FMNCannabinoid receptor 1 / 0.768
2mok FMNFlavodoxin 1 / 0.766
5tgz FMNCannabinoid receptor 1 / 0.765
1fue FMNFlavodoxin / 0.759
1aku FMNFlavodoxin / 0.747
4bmp FMNProtein NrdI / 0.747
3hr4 FMNNitric oxide synthase, inducible 1.14.13.39 0.737
1yob FMNFlavodoxin 2 / 0.732
4fx2 FMNFlavodoxin / 0.732
2bf4 FMNNADPH--cytochrome P450 reductase / 0.731
1fx1 FMNFlavodoxin / 0.724
1ja0 FMNNADPH--cytochrome P450 reductase / 0.717
1amo FMNNADPH--cytochrome P450 reductase / 0.707
4yao FMNNADPH--cytochrome P450 reductase / 0.707
4bmo FMNProtein NrdI / 0.706
4y7c FMNNADPH--cytochrome P450 reductase / 0.704
2ohi FMNType A flavoprotein FprA 1 0.702
1akw FMNFlavodoxin / 0.697
3f6s FMNFlavodoxin / 0.697
3kap FMNFlavodoxin / 0.697
5xr8 FMNCannabinoid receptor 1 / 0.693
2q9u FMNA-type flavoprotein / 0.691
2w5u FMNFlavodoxin / 0.691
4h2d FMNNADPH-dependent diflavin oxidoreductase 1 / 0.688
2ohh FMNType A flavoprotein FprA 1 0.683
1xyy FMNFlavodoxin / 0.680
2ohj FMNType A flavoprotein FprA 1 0.679
3f6r FMNFlavodoxin / 0.677
5fx2 FMNFlavodoxin / 0.677
2hpv FMNFMN-dependent NADH-azoreductase 1.7 0.676
3in6 FMNUncharacterized protein / 0.669
3f90 FMNFlavodoxin / 0.667
2mt9 FMNFlavodoxin 2 / 0.666
4n9q FMNFMN-dependent NADH-azoreductase 1 / 0.660
2fcr FMNFlavodoxin / 0.659
3ojw FMNNADPH--cytochrome P450 reductase / 0.659
3qe2 FMNNADPH--cytochrome P450 reductase / 0.659
3qfr FMNNADPH--cytochrome P450 reductase / 0.659
1zp3 FAD5,10-methylenetetrahydrofolate reductase 1.5.1.20 0.654
3bnk FMNFlavoredoxin / 0.653
3n3b FMNProtein NrdI / 0.653
1ycg FMNNitric oxide reductase 1 0.652
1bu5 RBFFlavodoxin / 0.651
1ja1 FMNNADPH--cytochrome P450 reductase / 0.651