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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3erd DES Estrogen receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3erd DESEstrogen receptor / 1.158
4zn7 DESEstrogen receptor / 1.024
4pp6 STLEstrogen receptor / 0.785
1s9p DESEstrogen-related receptor gamma / 0.775
4dma 0L8Estrogen receptor / 0.740
2fai 459Estrogen receptor / 0.738
2qgt EEDEstrogen receptor / 0.724
4iv4 1GSEstrogen receptor / 0.716
1err RALEstrogen receptor / 0.712
2jf9 OHTEstrogen receptor / 0.703
4iwc 1GVEstrogen receptor / 0.686
1xqc AEJEstrogen receptor / 0.683
1uom PTIEstrogen receptor / 0.666
4iu7 1GMEstrogen receptor / 0.666
4e5f 0N7Polymerase acidic protein / 0.664
2jfa RALEstrogen receptor / 0.661
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660