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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3er9 3AT Poly(A) polymerase catalytic subunit 2.7.7.19

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3er9 3ATPoly(A) polymerase catalytic subunit 2.7.7.19 1.104
4u0m GTPCyclic GMP-AMP synthase / 0.722
4xj4 3ATCyclic GMP-AMP synthase / 0.713
4u03 GTPCyclic GMP-AMP synthase / 0.711
4txz G2PCyclic GMP-AMP synthase / 0.710
4yvz 3ATDNA integrity scanning protein DisA / 0.703
3g6x DGTDNA polymerase iota 2.7.7.7 0.699
4xj3 GTPCyclic GMP-AMP synthase / 0.693
4fvq ATPTyrosine-protein kinase JAK2 / 0.688
4fvr ATPTyrosine-protein kinase JAK2 / 0.684
1r89 CTPCCA-adding enzyme 2.7.7.72 0.675
2b51 UTPRNA editing complex protein MP57 / 0.671
5i4n ATPTyrosine-protein kinase JAK2 / 0.669
1n75 ATPGlutamate--tRNA ligase 6.1.1.17 0.668
4lt6 3ATPoly(A) polymerase gamma 2.7.7.19 0.665
1r8b ATPCCA-adding enzyme 2.7.7.72 0.664
3q23 G2PVirion DNA-directed RNA polymerase / 0.664
5c03 AGSNon-receptor tyrosine-protein kinase TYK2 2.7.10.2 0.662
5cns DATRibonucleoside-diphosphate reductase 1 subunit alpha 1.17.4.1 0.659
1atn ATPActin, alpha skeletal muscle / 0.658
3mn9 ATPActin-5C / 0.658
3au2 DGTDNA polymerase beta family (X family) / 0.657
3tkl GTPRas-related protein Rab-1A / 0.657
4rwn APC2'-5'-oligoadenylate synthase 1 2.7.7.84 0.657
1r8c UTPCCA-adding enzyme 2.7.7.72 0.655
4zwg DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.654
3mhy ATPNitrogen regulatory protein P-II 1 / 0.652
4tnr DTPDeoxynucleoside triphosphate triphosphohydrolase SAMHD1 3.1.5 0.651