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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eem 53V Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eem 53VUncharacterized protein / 1.321
3eek 53SUncharacterized protein / 1.119
3eej 53RUncharacterized protein / 1.109
3eel 53TUncharacterized protein / 1.010
3qlr QLRDihydrofolate reductase 1.5.1.3 0.758
4e5i 0N9Polymerase acidic protein / 0.744
3cse N22Uncharacterized protein / 0.727
3qlz QLZUncharacterized protein / 0.717
3qls 55VDihydrofolate reductase 1.5.1.3 0.711
3qlx QLRUncharacterized protein / 0.701
3d80 Q22Dihydrofolate reductase 1.5.1.3 0.665
3k45 51PDihydrofolate reductase 1.5.1.3 0.662
4h97 53SDihydrofolate reductase 1.5.1.3 0.662
4e5f 0N7Polymerase acidic protein / 0.660
4p68 MTXDihydrofolate reductase / 0.658