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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eej 53R Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eej 53RUncharacterized protein / 1.272
3eek 53SUncharacterized protein / 1.161
3eel 53TUncharacterized protein / 1.114
3eem 53VUncharacterized protein / 1.109
4kak 06UDihydrofolate reductase 1.5.1.3 0.754
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
3qlx QLRUncharacterized protein / 0.744
4h97 53SDihydrofolate reductase 1.5.1.3 0.727
3qlz QLZUncharacterized protein / 0.718
3oaf OAGDihydrofolate reductase 1.5.1.3 0.682
3k45 51PDihydrofolate reductase 1.5.1.3 0.679
1ly3 COGDihydrofolate reductase 1.5.1.3 0.671
3nxt D2EDihydrofolate reductase 1.5.1.3 0.666
1s3w TQTDihydrofolate reductase 1.5.1.3 0.663
3um6 1CYBifunctional dihydrofolate reductase-thymidylate synthase / 0.663
4e5f 0N7Polymerase acidic protein / 0.660
3qly 55VUncharacterized protein / 0.659
3sai 9DRDihydrofolate reductase / 0.659
4ixe IXEDihydrofolate reductase 1.5.1.3 0.655
3d80 Q22Dihydrofolate reductase 1.5.1.3 0.653