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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eb0 DRK Uncharacterized protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eb0 DRKUncharacterized protein / 1.034
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4fkp LS5Cyclin-dependent kinase 2 2.7.11.22 0.732
4fkt 48KCyclin-dependent kinase 2 2.7.11.22 0.730
1ke8 LS4Cyclin-dependent kinase 2 2.7.11.22 0.727
4c59 FEFCyclin-G-associated kinase 2.7.11.1 0.720
4fkq 42KCyclin-dependent kinase 2 2.7.11.22 0.714
1p2a 5BNCyclin-dependent kinase 2 2.7.11.22 0.713
4fks 46KCyclin-dependent kinase 2 2.7.11.22 0.710
1ke5 LS1Cyclin-dependent kinase 2 2.7.11.22 0.707
4fkw 62KCyclin-dependent kinase 2 2.7.11.22 0.705
3mtl FEFCyclin-dependent kinase 16 2.7.11.22 0.703
1fvt 106Cyclin-dependent kinase 2 2.7.11.22 0.696
1ke9 LS5Cyclin-dependent kinase 2 2.7.11.22 0.693
4fkr 45KCyclin-dependent kinase 2 2.7.11.22 0.692
1uv5 BRWGlycogen synthase kinase-3 beta 2.7.11.26 0.688
2qkr IXMCdc2-like CDK2/CDC28 like protein kinase / 0.683
1ke6 LS2Cyclin-dependent kinase 2 2.7.11.22 0.680
2gdo 12CSerine/threonine-protein kinase Chk1 2.7.11.1 0.678
2bhe BRYCyclin-dependent kinase 2 2.7.11.22 0.677
1ke7 LS3Cyclin-dependent kinase 2 2.7.11.22 0.672
2vz6 FEFCalcium/calmodulin-dependent protein kinase type II subunit alpha 2.7.11.17 0.662
4e5f 0N7Polymerase acidic protein / 0.660
3ti1 B49Cyclin-dependent kinase 2 2.7.11.22 0.656