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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3eai 328 Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3eai 328Nitric oxide synthase, inducible 1.14.13.39 0.880
3e7m AT2Nitric oxide synthase, inducible 1.14.13.39 0.808
3e7g AT2Nitric oxide synthase, inducible 1.14.13.39 0.794
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3e6t 1A2Nitric oxide synthase, inducible 1.14.13.39 0.674
4e5f 0N7Polymerase acidic protein / 0.660
3e7t B14Nitric oxide synthase, inducible 1.14.13.39 0.657