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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3e67 H4B Nitric oxide synthase, inducible 1.14.13.39

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3e67 H4BNitric oxide synthase, inducible 1.14.13.39 0.763
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
1m8h H4BNitric oxide synthase, inducible 1.14.13.39 0.724
1m8e H4BNitric oxide synthase, inducible 1.14.13.39 0.720
1m8d H4BNitric oxide synthase, inducible 1.14.13.39 0.712
3e6t H4BNitric oxide synthase, inducible 1.14.13.39 0.710
3w6h AZMCarbonic anhydrase 1 4.2.1.1 0.710
3e6o H4BNitric oxide synthase, inducible 1.14.13.39 0.703
1m8i H4BNitric oxide synthase, inducible 1.14.13.39 0.701
4blt APCNTPase P4 / 0.688
4js9 H4BNitric oxide synthase, inducible 1.14.13.39 0.679
2g6i HBINitric oxide synthase, brain 1.14.13.39 0.674
1agw SU2Fibroblast growth factor receptor 1 / 0.673
3rqm H4BNitric oxide synthase, brain 1.14.13.39 0.672
4jsg H4BNitric oxide synthase, brain 1.14.13.39 0.672
1vaf H4BNitric oxide synthase, inducible 1.14.13.39 0.671
3nod H4BNitric oxide synthase, inducible 1.14.13.39 0.670
1qw5 H4BNitric oxide synthase, inducible 1.14.13.39 0.669
1uma IN2Prothrombin 3.4.21.5 0.667
4jsf H4BNitric oxide synthase, brain 1.14.13.39 0.664
1dwx H4BNitric oxide synthase, inducible 1.14.13.39 0.661
4e5f 0N7Polymerase acidic protein / 0.660
4eux H4BNitric oxide synthase, brain 1.14.13.39 0.660
3jx6 H4BNitric oxide synthase, brain 1.14.13.39 0.659
3ufw H4BNitric oxide synthase, brain 1.14.13.39 0.659
2nod H4BNitric oxide synthase, inducible 1.14.13.39 0.658
1k2s H4BNitric oxide synthase, brain 1.14.13.39 0.657
1k2u H4BNitric oxide synthase, brain 1.14.13.39 0.657
3pne H4BNitric oxide synthase, brain 1.14.13.39 0.657
3stx BKAMethylketone synthase I / 0.657
3ufq H4BNitric oxide synthase, brain 1.14.13.39 0.656
4imw H4BNitric oxide synthase, brain 1.14.13.39 0.656
3rql H4BNitric oxide synthase, brain 1.14.13.39 0.655
1zzq H4BNitric oxide synthase, brain 1.14.13.39 0.654
3ufp H4BNitric oxide synthase, brain 1.14.13.39 0.654
3vqd MOKPOL polyprotein / 0.654
4d1o H4BNitric oxide synthase, endothelial 1.14.13.39 0.654
3jt5 H4BNitric oxide synthase, brain 1.14.13.39 0.653
3nnz H4BNitric oxide synthase, brain 1.14.13.39 0.653
4cx4 H4BNitric oxide synthase, brain 1.14.13.39 0.653
2itw ITQEpidermal growth factor receptor 2.7.10.1 0.652
3b3m H4BNitric oxide synthase, brain 1.14.13.39 0.652
3nlz H4BNitric oxide synthase, brain 1.14.13.39 0.652
3ufu H4BNitric oxide synthase, brain 1.14.13.39 0.652
4cx3 H4BNitric oxide synthase, brain 1.14.13.39 0.652
3pnf H4BNitric oxide synthase, brain 1.14.13.39 0.651
3b3n H4BNitric oxide synthase, brain 1.14.13.39 0.650
3nny H4BNitric oxide synthase, brain 1.14.13.39 0.650
3ufs H4BNitric oxide synthase, brain 1.14.13.39 0.650