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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dzj NMN ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dzj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 1.022
2i65 NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.948
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.918
2o3u NGDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.911
3ghh 2NFCD38 molecule / 0.817
2hct NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.808
3dzi RGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.782
1isj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 3.2.2.6 0.689
3i9j NFDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.687
3i9k NADADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.679
4p5f AR6Inosine-uridine nucleoside N-ribohydrolase / 0.663