1.950 Å
X-ray
2006-06-18
Name: | ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 |
---|---|
ID: | CD38_HUMAN |
AC: | P28907 |
Organism: | Homo sapiens |
Reign: | Eukaryota |
TaxID: | 9606 |
EC Number: | 3.2.2.6 |
Chain Name: | Percentage of Residues within binding site |
---|---|
A | 100 % |
B-Factor: | 43.679 |
---|---|
Number of residues: | 29 |
Including | |
Standard Amino Acids: | 26 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 3 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
0.511 | 378.000 |
% Hydrophobic | % Polar |
---|---|
50.89 | 49.11 |
According to VolSite |
HET Code: | NMN |
---|---|
Formula: | C11H14N2O8P |
Molecular weight: | 333.211 g/mol |
DrugBank ID: | DB03227 |
Buried Surface Area: | 68.38 % |
Polar Surface area: | 178.89 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 8 |
H-Bond Donors: | 3 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 2 |
Cationic atoms: | 1 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 5 |
X | Y | Z |
---|---|---|
1.91786 | 0.813818 | 2.76568 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C5R | CZ3 | TRP- 125 | 3.72 | 0 | Hydrophobic |
C3R | CE2 | TRP- 125 | 3.69 | 0 | Hydrophobic |
C2R | CZ2 | TRP- 125 | 3.43 | 0 | Hydrophobic |
O3P | OG | SER- 126 | 2.91 | 168.49 | H-Bond (Protein Donor) |
O1P | N | ARG- 127 | 3.2 | 154.6 | H-Bond (Protein Donor) |
O1P | NE | ARG- 127 | 3.38 | 138.45 | H-Bond (Protein Donor) |
C2R | CD2 | LEU- 145 | 4.29 | 0 | Hydrophobic |
O2R | OE1 | GLU- 146 | 3.39 | 128.26 | H-Bond (Ligand Donor) |
N7 | OE2 | GLU- 146 | 3.31 | 151.51 | H-Bond (Ligand Donor) |
N7 | OD2 | ASP- 155 | 2.53 | 170.16 | H-Bond (Ligand Donor) |
O7 | N | ASP- 156 | 3.41 | 173.47 | H-Bond (Protein Donor) |
C5 | CB | TRP- 189 | 4.34 | 0 | Hydrophobic |
O2P | OG1 | THR- 221 | 3.46 | 143.86 | H-Bond (Protein Donor) |
O2P | N | THR- 221 | 2.91 | 169.37 | H-Bond (Protein Donor) |
C4R | CB | THR- 221 | 3.99 | 0 | Hydrophobic |
O3P | N | PHE- 222 | 3.17 | 174.88 | H-Bond (Protein Donor) |
O3R | O | HOH- 302 | 3.25 | 171.32 | H-Bond (Ligand Donor) |