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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dzi RGT ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dzi RGTADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 1.016
3ghh 2NFCD38 molecule / 0.848
3dzk NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.834
3dzj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.782
3i9j AVVADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.757
3p5s AVUCD38 molecule / 0.742
2o3u NGDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 1 3.2.2.6 0.732
3i9j NFDADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.719
1yf3 SAHDNA adenine methylase / 0.697
1isj NMNADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 2 3.2.2.6 0.688
4b8z GDPGDP-L-fucose synthase 1.1.1.271 0.683
2bzg SAHThiopurine S-methyltransferase 2.1.1.67 0.675
2bwg 5GPGMP reductase 1 / 0.673
2p0a ANPSynapsin-3 / 0.670
3bgi SAHThiopurine S-methyltransferase 2.1.1.67 0.667
4jem C5PCMP/hydroxymethyl CMP hydrolase / 0.667
3zwx AV1ADP-ribosyl cyclase/cyclic ADP-ribose hydrolase 3.2.2.6 0.666
3iv6 SAMUncharacterized protein / 0.665
5dx8 SFGHistone-arginine methyltransferase CARM1 / 0.665
3rv4 ADPBiotin carboxylase 6.3.4.14 0.659
4kxl 6C62'-deoxynucleoside 5'-phosphate N-hydrolase 1 / 0.659
2q28 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.657
2j9g ADPBiotin carboxylase 6.3.4.14 0.656
3ou6 SAMSAM-dependent methyltransferase / 0.656
4bvn P32Beta-1 adrenergic receptor / 0.655
5fsy AR6Uncharacterized protein / 0.654
3o3p GDDGlycosyl transferase, family 2 / 0.652
3uq9 TBNPutative adenosine kinase / 0.650
3w8r CTNUridine kinase / 0.650
4rtk SAHDNA adenine methylase 2.1.1.72 0.650