Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dla NXX Glutamine-dependent NAD(+) synthetase 6.3.5.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dla NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 1.128
3szg NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.916
3seq NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.862
3syt NADGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.850
3sez NXXGlutamine-dependent NAD(+) synthetase 6.3.5.1 0.836
1xng DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.786
1ee1 DNDNH(3)-dependent NAD(+) synthetase 6.3.1.5 0.663
4nh0 ATPESX secretion system protein EccC / 0.651