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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3dcv 55E Serine/threonine-protein kinase pim-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3dcv 55ESerine/threonine-protein kinase pim-1 2.7.11.1 0.920
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
2obj VRVSerine/threonine-protein kinase pim-1 2.7.11.1 0.741
3r04 UNQSerine/threonine-protein kinase pim-1 2.7.11.1 0.695
3jpv 1DRSerine/threonine-protein kinase pim-1 2.7.11.1 0.680
5auz GENDeath-associated protein kinase 1 2.7.11.1 0.677
4f9c 0SXCell division cycle 7-related protein kinase 2.7.11.1 0.672
5av4 GENDeath-associated protein kinase 1 2.7.11.1 0.668
5av0 47XDeath-associated protein kinase 1 2.7.11.1 0.667
4e5f 0N7Polymerase acidic protein / 0.660
1uv5 BRWGlycogen synthase kinase-3 beta 2.7.11.26 0.659
3cy3 JN5Serine/threonine-protein kinase pim-1 2.7.11.1 0.653
2r64 740Cyclin-dependent kinase 2 2.7.11.22 0.651