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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3clu FAD Electron transfer flavoprotein subunit alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3clu FADElectron transfer flavoprotein subunit alpha / 1.469
3clr FADElectron transfer flavoprotein subunit alpha / 1.398
3clt FADElectron transfer flavoprotein subunit alpha / 1.331
3cls FADElectron transfer flavoprotein subunit alpha / 1.305
2a1u FADElectron transfer flavoprotein subunit alpha, mitochondrial / 1.133
1o97 FADElectron transfer flavoprotein subunit alpha / 1.118
1efp FADElectron transfer flavoprotein subunit alpha / 1.092
1efv FADElectron transfer flavoprotein subunit alpha, mitochondrial / 1.083
2c31 ADPOxalyl-CoA decarboxylase 4.1.1.8 0.707
2jib ADPOxalyl-CoA decarboxylase 4.1.1.8 0.705
2gj3 FADNitrogen fixation regulatory protein 2.7.13.3 0.697
4eeu FMNPhototropin-2 2.7.11.1 0.685
4hj3 FMNLOV protein / 0.685
4yac NAIC alpha-dehydrogenase / 0.682
1m2g APRNAD-dependent protein deacylase 1 / 0.679
4hj6 FMNLOV protein / 0.679
5ahk FADAcetolactate synthase II, large subunit / 0.679
2z6c FMNPhototropin-1 2.7.11.1 0.678
1y9d FADPyruvate oxidase 1.2.3.3 0.676
4yus FMNFamily 3 adenylate cyclase / 0.675
2hfo FMNActivator of photopigment and puc expression / 0.673
1yrx FMNAppA protein / 0.664
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.663
2iyg FMNAppA, antirepressor of ppsR, sensor of blue light / 0.662
4hms FMNPhenazine biosynthesis protein PhzG 1.4 0.662
1jsc FADAcetolactate synthase catalytic subunit, mitochondrial 2.2.1.6 0.659
4hj4 FMNLOV protein / 0.659
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.658
4hnb FMNLOV protein / 0.657
3lsh FADPyranose 2-oxidase / 0.651