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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c1o NAP Eugenol synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c1o NAPEugenol synthase / 1.180
2qw8 NAPEugenol synthase 1 1.1.1.318 0.828
3c3x NAPEugenol synthase 1 1.1.1.318 0.825
2qx7 NAPEugenol synthase 1 1.1.1.318 0.821
2r6j NDPEugenol synthase 1 1.1.1.318 0.783
1guf NDPEnoyl-[acyl-carrier-protein] reductase 1, mitochondrial 1.3.1.10 0.697
3zcb ATPAdenosine monophosphate-protein transferase VbhT 2.7.7.n1 0.668
4eb4 UMPThymidylate synthase 2.1.1.45 0.667
4hj6 FMNLOV protein / 0.664
5by6 UMPThymidylate synthase / 0.664
3p19 NDPPutative blue fluorescent protein / 0.661
3i6q NDPPutative leucoanthocyanidin reductase 1 / 0.660
2jkv NAP6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.656
4isk UMPThymidylate synthase / 0.655
1n7g NDPGDP-mannose 4,6 dehydratase 2 4.2.1.47 0.653
4ein NOHThymidylate synthase 2.1.1.45 0.653
4u7w NDPMxaA / 0.651
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.650