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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3c1k T15 Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3c1k T15Prothrombin 3.4.21.5 1.094
1mue CDDProthrombin 3.4.21.5 0.882
1sl3 170Prothrombin 3.4.21.5 0.851
1mu8 CDBProthrombin 3.4.21.5 0.812
1mu6 CDAProthrombin 3.4.21.5 0.798
2bxt C2DProthrombin 3.4.21.5 0.762
1z71 L17Prothrombin 3.4.21.5 0.758
1nm6 L86Prothrombin 3.4.21.5 0.753
1nt1 T76Prothrombin 3.4.21.5 0.748
4e5i 0N9Polymerase acidic protein / 0.744
2r2m I50Prothrombin 3.4.21.5 0.731
4bak M67Prothrombin 3.4.21.5 0.724
3utu 1TSProthrombin 3.4.21.5 0.723
4baq M4ZProthrombin 3.4.21.5 0.715
2znk 31UProthrombin 3.4.21.5 0.702
2zfq 45UProthrombin 3.4.21.5 0.701
4bah MELProthrombin 3.4.21.5 0.701
4bao MVFProthrombin 3.4.21.5 0.701
3c27 DKKProthrombin 3.4.21.5 0.681
3qwc 98PProthrombin 3.4.21.5 0.680
2zgb 21UProthrombin 3.4.21.5 0.678
1c4v IH2Prothrombin 3.4.21.5 0.675
1ypl RA8Prothrombin 3.4.21.5 0.675
4ban M6SProthrombin 3.4.21.5 0.675
2zda 32UProthrombin 3.4.21.5 0.674
2zhe 13UProthrombin 3.4.21.5 0.674
2zhq 27UProthrombin 3.4.21.5 0.672
2zi2 24UProthrombin 3.4.21.5 0.670
1zgi 382Prothrombin 3.4.21.5 0.664
1k22 MELProthrombin 3.4.21.5 0.661
2zg0 50UProthrombin 3.4.21.5 0.661
1d6w 00RProthrombin 3.4.21.5 0.660
3qto 10PProthrombin 3.4.21.5 0.659
2zdv 37UProthrombin 3.4.21.5 0.658
2zhf 49UProthrombin 3.4.21.5 0.657
4e7r 0NWProthrombin 3.4.21.5 0.655
2zc9 22UProthrombin 3.4.21.5 0.654
3dhk 23UProthrombin 3.4.21.5 0.654
4bam MM9Prothrombin 3.4.21.5 0.654
1uvs I11Prothrombin 3.4.21.5 0.653
1ta2 176Prothrombin 3.4.21.5 0.652
3dux 64UProthrombin 3.4.21.5 0.652
1d9i 00PProthrombin 3.4.21.5 0.651
1ta6 177Prothrombin 3.4.21.5 0.651
2zff 53UProthrombin 3.4.21.5 0.650