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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bl1 BL1 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bl1 BL1Carbonic anhydrase 2 4.2.1.1 0.890
3sax E50Carbonic anhydrase 2 4.2.1.1 0.794
3m98 E02Carbonic anhydrase 2 4.2.1.1 0.788
3s9t E49Carbonic anhydrase 2 4.2.1.1 0.783
3l14 I7BCarbonic anhydrase 2 4.2.1.1 0.780
2weh FB1Carbonic anhydrase 2 4.2.1.1 0.776
3f4x KLTCarbonic anhydrase 2 4.2.1.1 0.767
3m67 E36Carbonic anhydrase 2 4.2.1.1 0.763
4knn E1FCarbonic anhydrase 13 4.2.1.1 0.760
4kni E1ECarbonic anhydrase 2 4.2.1.1 0.756
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4knm E1ECarbonic anhydrase 13 4.2.1.1 0.740
1okn STBCarbonic anhydrase 2 4.2.1.1 0.712
4kp5 E1FCarbonic anhydrase 12 4.2.1.1 0.702
4knj E1FCarbonic anhydrase 2 4.2.1.1 0.701
3m96 E38Carbonic anhydrase 2 4.2.1.1 0.698
2pow I7CCarbonic anhydrase 2 4.2.1.1 0.694
3myq E27Carbonic anhydrase 2 4.2.1.1 0.689
3n2p AYXCarbonic anhydrase 2 4.2.1.1 0.689
2wej FB2Carbonic anhydrase 2 4.2.1.1 0.687
3m40 J45Carbonic anhydrase 2 4.2.1.1 0.684
3mho J43Carbonic anhydrase 2 4.2.1.1 0.682
1if5 FBTCarbonic anhydrase 2 4.2.1.1 0.680
4bf6 X0QCarbonic anhydrase 2 4.2.1.1 0.674
1cnx EG2Carbonic anhydrase 2 4.2.1.1 0.670
3rz8 RZ8Carbonic anhydrase 2 4.2.1.1 0.670
3m2n J74Carbonic anhydrase 2 4.2.1.1 0.666
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.663
3mhl J71Carbonic anhydrase 2 4.2.1.1 0.660
3sbi E90Carbonic anhydrase 2 4.2.1.1 0.658
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.656
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.653
1i91 INQCarbonic anhydrase 2 4.2.1.1 0.652
1xq0 4TRCarbonic anhydrase 2 4.2.1.1 0.652
1g1d FSBCarbonic anhydrase 2 4.2.1.1 0.650
2nn7 M29Carbonic anhydrase 1 4.2.1.1 0.650