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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3bem FMN Putative NAD(P)H nitroreductase MhqN 1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3bem FMNPutative NAD(P)H nitroreductase MhqN 1 1.293
4eo3 FMNBacterioferritin comigratory protein/NADH dehydrogenase / 0.923
1oo5 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.859
3x22 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.857
1oon FMNOxygen-insensitive NAD(P)H nitroreductase / 0.855
1ooq FMNOxygen-insensitive NAD(P)H nitroreductase / 0.848
1ds7 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.847
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.847
1icu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.834
1icv FMNOxygen-insensitive NAD(P)H nitroreductase / 0.830
1ylr FMNOxygen-insensitive NAD(P)H nitroreductase / 0.830
3gfd FMNIodotyrosine deiodinase 1 1.21.1.1 0.820
3gag FMNPutative NADH dehydrogenase NAD(P)H nitroreductase / 0.819
3to0 FMNIodotyrosine deiodinase 1 1.21.1.1 0.817
1nec FMNOxygen-insensitive NAD(P)H nitroreductase 1 0.815
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.808
3x21 FMNOxygen-insensitive NAD(P)H nitroreductase / 0.804
4qly FMNEnone reductase CLA-ER / 0.804
2isl FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.803
1kqd FMNOxygen-insensitive NAD(P)H nitroreductase / 0.800
1ylu FMNOxygen-insensitive NAD(P)H nitroreductase / 0.795
1kqb FMNOxygen-insensitive NAD(P)H nitroreductase / 0.789
4xoo FMNCoenzyme F420:L-glutamate ligase / 0.789
2wzv FMNNitroreductase NfnB / 0.787
2hay FMNPutative NAD(P)H-flavin oxidoreductase / 0.782
4ttb FMNIodotyrosine deiodinase 1 / 0.778
3qdl FMNOxygen-insensitive NADPH nitroreductase / 0.772
3gh8 FMNIodotyrosine deiodinase 1 1.21.1.1 0.771
2wzw FMNNitroreductase NfnB / 0.769
4ttc FMNIodotyrosine deiodinase 1 / 0.763
1vfr FMNMajor NAD(P)H-flavin oxidoreductase 1.6.99 0.761
3eo8 FMNPutative nitroreductase / 0.755
3ge6 FMNNitroreductase / 0.755
3of4 FMNNitroreductase / 0.752
2fre FMNNAD(P)H-flavin oxidoreductase / 0.751
3e39 FMNNitroreductase / 0.745
3koq FMNPutative nitroreductase / 0.725
2isk FNR5,6-dimethylbenzimidazole synthase 1.13.11.79 0.720
3eof FMNPutative oxidase / 0.698
3pxv FMNNitroreductase / 0.698
3u33 FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.692
2bkj FMNNADPH-flavin oxidoreductase / 0.683
3hj9 FMNUncharacterized protein / 0.674
3mpj FADGlutaryl-CoA dehydrogenase 1.3.99.32 0.672
3oib FDAPutative acyl-CoA dehydrogenase / 0.670
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.668
5eb5 FAD(R)-mandelonitrile lyase 1 4.1.2.10 0.666
4hnb FMNLOV protein / 0.663
3e4v FMNUncharacterized protein / 0.659
5a89 FMNRiboflavin biosynthesis protein RibF 2.7.1.26 0.658
1ju2 FAD(R)-mandelonitrile lyase 2 4.1.2.10 0.657
2jbs FMNp-hydroxyphenylacetate 3-hydroxylase, oxygenase component / 0.657
2i02 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.654
4hhd FMNPhototropin-1 2.7.11.1 0.652
4a3u FMNNADH:flavin oxidoreductase/NADH oxidase / 0.650