Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3anm SYD 1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3anm SYD1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.991
3r0i C0K1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.789
1onp FOM1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.738
3zhx FM61-deoxy-D-xylulose 5-phosphate reductoisomerase / 0.735
3anl SYC1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.732
3upy FOMOxidoreductase, putative / 0.664
2egh FOM1-deoxy-D-xylulose 5-phosphate reductoisomerase 1.1.1.267 0.661
3bgz VX3Serine/threonine-protein kinase pim-1 2.7.11.1 0.656
1ib0 NADNADH-cytochrome b5 reductase 3 1.6.2.2 0.654