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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3akn 11D Fatty acid-binding protein, intestinal

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3akn 11DFatty acid-binding protein, intestinal / 1.457
3akm 11DFatty acid-binding protein, intestinal / 0.930
1n38 U3HRNA-directed RNA polymerase lambda-3 2.7.7.48 0.663
3ncg BK1Calmodulin-domain protein kinase 1, putative / 0.658
2qpy DHTAndrogen receptor / 0.657
3nnx EDDMitogen-activated protein kinase 14 / 0.656
1n1e NDEGlycerol-3-phosphate dehydrogenase [NAD(+)], glycosomal 1.1.1.8 0.654
2wsa MYAGlycylpeptide N-tetradecanoyltransferase / 0.654
3vhi VHIAvidin / 0.654
1swe BTNStreptavidin / 0.650