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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3ag6 PAJ Pantothenate synthetase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3ag6 PAJPantothenate synthetase / 1.215
1n2i PAJPantothenate synthetase 6.3.2.1 1.079
1n2h PAJPantothenate synthetase 6.3.2.1 0.996
3coy 53HPantothenate synthetase 6.3.2.1 0.982
3cow 52HPantothenate synthetase 6.3.2.1 0.950
3coz 54HPantothenate synthetase 6.3.2.1 0.877
1n2b PAFPantothenate synthetase 6.3.2.1 0.785
2x3f APCPantothenate synthetase / 0.761
1n2j PAFPantothenate synthetase 6.3.2.1 0.756
3ioe A7DPantothenate synthetase 6.3.2.1 0.747
1n2e APCPantothenate synthetase 6.3.2.1 0.746
2a84 ATPPantothenate synthetase 6.3.2.1 0.746
3iob A4DPantothenate synthetase 6.3.2.1 0.727
1n2g APCPantothenate synthetase 6.3.2.1 0.711
5hg0 SAMPantothenate synthetase / 0.704
3kt3 TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.699
1r6t TYMTryptophan--tRNA ligase, cytoplasmic 6.1.1.2 0.693
1k4m NADNicotinate-nucleotide adenylyltransferase 2.7.7.18 0.683
4j75 TYMTryptophan--tRNA ligase / 0.682
3iod A6DPantothenate synthetase 6.3.2.1 0.674
3h5n ATPMccB protein / 0.660
1gtr ATPGlutamine--tRNA ligase 6.1.1.18 0.659
1nuq NXXNicotinamide/nicotinic acid mononucleotide adenylyltransferase 3 / 0.655
2db3 ANPATP-dependent RNA helicase vasa, isoform A 3.6.4.13 0.652