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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3a60 STU Ribosomal protein S6 kinase beta-1 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3a60 STURibosomal protein S6 kinase beta-1 2.7.11.1 1.097
1xjd STUProtein kinase C theta type 2.7.11.13 0.840
2buj STUSerine/threonine-protein kinase 16 / 0.763
1qpd STUTyrosine-protein kinase Lck 2.7.10.2 0.757
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2dq7 STUTyrosine-protein kinase Fyn 2.7.10.2 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4c34 STUcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.711
1u59 STUTyrosine-protein kinase ZAP-70 2.7.10.2 0.700
5e8y STUTGF-beta receptor type-2 2.7.11.30 0.699
3a62 STURibosomal protein S6 kinase beta-1 2.7.11.1 0.698
1yvj 4STTyrosine-protein kinase JAK3 2.7.10.2 0.687
2nry STUInterleukin-1 receptor-associated kinase 4 2.7.11.1 0.681
4fr4 STUSerine/threonine-protein kinase 32A 2.7.11.1 0.677
4e5f 0N7Polymerase acidic protein / 0.660
1okz UCN3-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.659
1uu3 LY43-phosphoinositide-dependent protein kinase 1 2.7.11.1 0.658
4bf2 STUMitogen-activated protein kinase kinase kinase 5 2.7.11.25 0.658
1nxk STUMAP kinase-activated protein kinase 2 2.7.11.1 0.657
4fny I3KALK tyrosine kinase receptor 2.7.10.1 0.651