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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
3a3g DLZ Lumazine protein

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
3a3g DLZLumazine protein / 1.096
3a3b RBFLumazine protein / 1.030
1pkv RBFRiboflavin synthase 2.5.1.9 0.825
5buk FADFADH2-dependent halogenase / 0.698
4f07 FADStyrene monooxygenase component 2 / 0.696
2i51 FMNPyridoxamine 5'-phosphate oxidase-related, FMN-binding / 0.694
3bm1 FMNPutative NAD(P)H nitroreductase YdjA / 0.691
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.687
2ok7 FADFerredoxin--NADP reductase, apicoplast / 0.686
4kuk RBFPutative blue-light photoreceptor / 0.678
2pd7 FADVivid PAS protein VVD / 0.672
2gmh FADElectron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial 1.5.5.1 0.671
3ept FDAPutative FAD-monooxygenase / 0.670
3jqr FADFerredoxin--NADP reductase, apicoplast / 0.670
2ok8 FADFerredoxin--NADP reductase, apicoplast / 0.669
3fpk FADFerredoxin-NADP reductase / 0.669
1wv4 FMNPyridoxine/pyridoxamine 5'-phosphate oxidase / 0.667
2bn4 FADNADPH--cytochrome P450 reductase / 0.667
4ylf FADDihydroorotate dehydrogenase B (NAD(+)), electron transfer subunit homolog / 0.665
1usc FMNMonooxygenase / 0.664
2wp5 FADTrypanothione reductase / 0.664
4qoe FADRibosyldihydronicotinamide dehydrogenase [quinone] / 0.664
2ywl FADThioredoxin reductase related protein / 0.662
3e4v FMNUncharacterized protein / 0.662
3lzx FADFerredoxin--NADP reductase 2 1.18.1.2 0.662
4wuj FMNGlycoside hydrolase family 15, cellulose signaling associated protein envoy / 0.660
4opl FDAConserved Archaeal protein / 0.659
5cho FADFlavin reductase / 0.659
3d72 FADVivid PAS protein VVD / 0.658
4fk8 FADFerredoxin--NADP reductase / 0.658
1g63 FMNEpidermin decarboxylase 4.1.1 0.656
4rhe FMNFlavin prenyltransferase UbiX / 0.655
1gjr FADFerredoxin--NADP reductase 1.18.1.2 0.654
1eje FMNProtein MTH_152 / 0.653
4hmx FMNPyridoxamine 5'-phosphate oxidase / 0.652
1kqc FMNOxygen-insensitive NAD(P)H nitroreductase / 0.651
1mok FAD2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.651
1zy8 FADDihydrolipoyl dehydrogenase, mitochondrial 1.8.1.4 0.651
4r38 RBFBlue-light-activated histidine kinase 2 2.7.13.3 0.651