Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zvb SAH Precorrin-3 C17-methyltransferase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zvb SAHPrecorrin-3 C17-methyltransferase / 1.051
2zvc SAHPrecorrin-3 C17-methyltransferase / 1.008
2qbu SAHPrecorrin-2 methyltransferase / 0.897
3nut SAHPrecorrin-3 methylase / 0.817
2ybo SAHMethyltransferase / 0.816
3nd1 SAHPrecorrin-6A synthase (Deacetylating) / 0.814
1v9a SAHUncharacterized protein / 0.801
3ndc SAHPrecorrin-4 C(11)-methyltransferase 2.1.1.133 0.800
2npn SAMPutative cobalamin synthesis related protein / 0.798
1s4d SAHUroporphyrinogen-III C-methyltransferase 2.1.1.107 0.786
2e0n SAHPrecorrin-2 C20-methyltransferase / 0.720
1cbf SAHCobalt-precorrin-4 C(11)-methyltransferase 2.1.1.271 0.717
2ek3 SAHDiphthine synthase / 0.701
2dv7 SAHDiphthine synthase / 0.698
4x3l MTARNA 2'-O ribose methyltransferase / 0.695
2bb3 SAHCobalamin biosynthesis precorrin-6Y methylase (CbiE) / 0.690
2e15 SAHDiphthine synthase / 0.685
2ed5 SAHDiphthine synthase / 0.683
2egv SAMRibosomal RNA small subunit methyltransferase E 2.1.1.193 0.683
4pzk SAHPutative tRNA (cytidine(34)-2'-O)-methyltransferase / 0.682
2e17 SAHDiphthine synthase / 0.680
2eni SAHDiphthine synthase / 0.677
2p6l SAHDiphthine synthase / 0.677
2egl SAHDiphthine synthase / 0.673
2dxv SAHDiphthine synthase / 0.672
2e16 SAHDiphthine synthase / 0.672
2dxx SAHDiphthine synthase / 0.671
2ek7 SAHDiphthine synthase / 0.670
2dv5 SAHDiphthine synthase / 0.669
2ha8 SAHProbable methyltransferase TARBP1 / 0.669
2p6i SAHDiphthine synthase / 0.669
4jl8 ADPAdenylate kinase / 0.669
4cnf MTASpoU rRNA methylase / 0.668
2pck SAHDiphthine synthase / 0.667
2dxw SAHDiphthine synthase / 0.665
2eh2 SAHDiphthine synthase / 0.665
3nk7 SAM23S rRNA (adenosine(1067)-2'-O)-methyltransferase / 0.665
4kgn SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.665
4cng SAHSpoU rRNA methylase / 0.664
5a7y SAHtRNA (adenine(9)-N1)-methyltransferase 2.1.1.218 0.663
2e07 SAHDiphthine synthase / 0.662
1mjh ATPUniversal stress protein MJ0577 / 0.661
2ele SAHDiphthine synthase / 0.661
2p9d SAHDiphthine synthase / 0.661
2pcm SAHDiphthine synthase / 0.661
2yy8 MTAtRNA (cytidine(56)-2'-O)-methyltransferase / 0.661
2owk SAHDiphthine synthase / 0.658
2dsg SAHDiphthine synthase / 0.656
2egb SAHDiphthine synthase / 0.656
2p5c SAHDiphthine synthase / 0.655
2ehl SAHDiphthine synthase / 0.654
2z6r SAHDiphthine synthase / 0.654
1mxi SAHtRNA (cytidine(34)-2'-O)-methyltransferase / 0.653
2ed3 SAHDiphthine synthase / 0.652
2p6k SAHDiphthine synthase / 0.651