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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zrf DTP Protein RecA

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zrf DTPProtein RecA / 0.979
1wdt GTPElongation factor G (EF-G-2) / 0.705
1gil GSPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.681
4zca ADPKinesin-like protein KIF11 / 0.679
3vx4 ATPPutative ABC transporter, ATP-binding protein ComA / 0.678
3k3b ADPKinesin-like protein KIF11 / 0.670
1zbd GTPRas-related protein Rab-3A / 0.664
2ffq GSPRas-related protein Rab-6B / 0.662
3bb3 GDPTranslocase of chloroplast 33, chloroplastic 3.6.5 0.662
1svw GTPProbable GTP-binding protein EngB / 0.661
2fgk ATPAlpha-hemolysin translocation ATP-binding protein HlyB / 0.660
2gvd GSPGuanine nucleotide-binding protein G(s) subunit alpha isoforms short / 0.660
4qnr ATPPsp operon transcriptional activator / 0.659
1gp2 GDPGuanine nucleotide-binding protein G(i) subunit alpha-1 / 0.656
1ny5 ADPTranscriptional regulator (NtrC family) / 0.655
4d81 ADPAAA ATPase, central domain protein / 0.655
2fju GSPRas-related C3 botulinum toxin substrate 1 / 0.652
3kz1 GSPTransforming protein RhoA / 0.652
2dpx GDPGTP-binding protein RAD / 0.651
4dxa GSPRas-related protein Rap-1b / 0.651
4kvg GTPRas-related protein Rap-1A / 0.651
3ref GDPRho family GTPase / 0.650
5c46 GSPRas-related protein Rab-11A / 0.650