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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2zfp 19U Prothrombin 3.4.21.5

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2zfp 19UProthrombin 3.4.21.5 0.914
3dhk 23UProthrombin 3.4.21.5 0.853
3dux 64UProthrombin 3.4.21.5 0.839
2zgb 21UProthrombin 3.4.21.5 0.831
2zf0 51UProthrombin 3.4.21.5 0.829
2zc9 22UProthrombin 3.4.21.5 0.827
2zff 53UProthrombin 3.4.21.5 0.825
1ta6 177Prothrombin 3.4.21.5 0.821
2zdv 37UProthrombin 3.4.21.5 0.817
3eq0 2TSProthrombin 3.4.21.5 0.812
1zrb 062Prothrombin 3.4.21.5 0.808
1ta2 176Prothrombin 3.4.21.5 0.805
2znk 31UProthrombin 3.4.21.5 0.786
3qwc 98PProthrombin 3.4.21.5 0.776
1nt1 T76Prothrombin 3.4.21.5 0.770
2zda 32UProthrombin 3.4.21.5 0.768
3f68 91UProthrombin 3.4.21.5 0.768
1sl3 170Prothrombin 3.4.21.5 0.766
3qtv 06PProthrombin 3.4.21.5 0.749
2zgx 29UProthrombin 3.4.21.5 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3utu 1TSProthrombin 3.4.21.5 0.741
3qto 10PProthrombin 3.4.21.5 0.731
3p17 99PProthrombin 3.4.21.5 0.724
2zg0 50UProthrombin 3.4.21.5 0.723
2zi2 24UProthrombin 3.4.21.5 0.720
1nm6 L86Prothrombin 3.4.21.5 0.707
1ae8 AZLProthrombin 3.4.21.5 0.706
1z71 L17Prothrombin 3.4.21.5 0.706
2zfq 45UProthrombin 3.4.21.5 0.704
4baq M4ZProthrombin 3.4.21.5 0.700
5cmx 0G6Prothrombin 3.4.21.5 0.694
1riw OSCProthrombin 3.4.21.5 0.691
2anm CDOProthrombin 3.4.21.5 0.690
2zhq 27UProthrombin 3.4.21.5 0.690
1k22 MELProthrombin 3.4.21.5 0.687
1k21 IGNProthrombin 3.4.21.5 0.686
1afe ALZProthrombin 3.4.21.5 0.684
2zfr 46UProthrombin 3.4.21.5 0.684
4bah MELProthrombin 3.4.21.5 0.684
4ban M6SProthrombin 3.4.21.5 0.682
2ziq 26UProthrombin 3.4.21.5 0.678
1mue CDDProthrombin 3.4.21.5 0.673
2zhf 49UProthrombin 3.4.21.5 0.673
1vja 7INUrokinase-type plasminogen activator 3.4.21.73 0.671
4bak M67Prothrombin 3.4.21.5 0.670
2bxt C2DProthrombin 3.4.21.5 0.668
1xm1 GAHProthrombin 3.4.21.5 0.666
4bam MM9Prothrombin 3.4.21.5 0.665
2gde SN3Prothrombin 3.4.21.5 0.664
1mu8 CDBProthrombin 3.4.21.5 0.663
1o0d 163Prothrombin 3.4.21.5 0.662
1ypl RA8Prothrombin 3.4.21.5 0.661
2vh0 GSICoagulation factor X 3.4.21.6 0.656
2a2x NA9Prothrombin 3.4.21.5 0.652
2xbx RR8Coagulation factor X 3.4.21.6 0.651
4ayy 9MXProthrombin 3.4.21.5 0.651