Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yyl FAD 4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yyl FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 1.258
2yyi FAD4-hydroxyphenylacetate 3-monooxygenase oxygenase component 1.14.14.9 1.093
1u8v FAD4-hydroxybutyryl-CoA dehydratase/vinylacetyl-CoA-Delta-isomerase / 0.744
2pg0 FADAcyl-CoA dehydrogenase / 0.724
4iv6 FDAIsovaleryl-CoA dehydrogenase / 0.720
3mdd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.706
3owa FADAcyl-CoA dehydrogenase / 0.695
4x28 FDAAcyl-CoA dehydrogenase FadE26 / 0.694
4x28 FDAAcyl-CoA dehydrogenase FadE27 / 0.694
1jqi FADShort-chain specific acyl-CoA dehydrogenase, mitochondrial / 0.686
4p13 FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.683
3djl FADPutative acyl-CoA dehydrogenase AidB 1.3.99 0.682
2ix5 FADAcyl-coenzyme A oxidase 4, peroxisomal 1.3.3.6 0.680
2isj FMN5,6-dimethylbenzimidazole synthase 1.13.11.79 0.677
1yki FMNOxygen-insensitive NAD(P)H nitroreductase / 0.674
3p4t FAOPutative acyl-CoA dehydrogenase / 0.664
4opc FDAConserved Archaeal protein / 0.661
4opd FDAConserved Archaeal protein / 0.659
2z6c FMNPhototropin-1 2.7.11.1 0.657
2r4t ADPGlycogen synthase 2.4.1.21 0.656
2z6d FMNPhototropin-2 2.7.11.1 0.655
1egd FADMedium-chain specific acyl-CoA dehydrogenase, mitochondrial 1.3.8.7 0.652
4y9l FADAcyl-CoA dehydrogenase family member 11 / 0.652
1kyv RBF6,7-dimethyl-8-ribityllumazine synthase 2.5.1.78 0.651