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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2yy5 WSA Tryptophan--tRNA ligase 6.1.1.2

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2yy5 WSATryptophan--tRNA ligase 6.1.1.2 1.191
1i6l TYMTryptophan--tRNA ligase 6.1.1.2 0.916
1i6k TYMTryptophan--tRNA ligase 6.1.1.2 0.879
2h2a DNDProbable nicotinate-nucleotide adenylyltransferase / 0.680
3coz 54HPantothenate synthetase 6.3.2.1 0.678
2pid YSATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.677
4eak ATP5'-AMP-activated protein kinase subunit gamma-1 / 0.665
3zxi TYATyrosine--tRNA ligase, mitochondrial 6.1.1.1 0.662
1n2h PAJPantothenate synthetase 6.3.2.1 0.656
2d4v NADIsocitrate dehydrogenase [NADP] / 0.654
2v51 ATPActin, alpha skeletal muscle / 0.654
2ztl NADD(-)-3-hydroxybutyrate dehydrogenase / 0.654