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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ywv ADP Phosphoribosylaminoimidazole-succinocarboxamide synthase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ywv ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase / 1.128
4o7n ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.832
2gqr ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.774
2z02 ATPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.758
4o7l ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.735
4fgr ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.730
4nye ADPPhosphoribosylaminoimidazole-succinocarboxamide synthase 6.3.2.6 0.702
4ihj GTPTubulin alpha-1B chain / 0.700
4iij GTPTubulin alpha-1B chain / 0.687
4idp GNPAtlastin-1 3.6.5 0.680
2zev B71Geranylgeranyl pyrophosphate synthase / 0.677
5l3s GNPSignal recognition particle receptor FtsY / 0.677
4tv9 GTPTubulin alpha-1B chain / 0.674
5jqg GTPTubulin alpha-1B chain / 0.671
2qtv GNPSmall COPII coat GTPase SAR1 3.6.5 0.669
4idn GNPAtlastin-1 3.6.5 0.669
4tuy GTPTubulin alpha-1B chain / 0.669
4wbn GTPTubulin alpha-1B chain / 0.669
5la6 GTPTubulin alpha-1B chain / 0.669
2jj2 ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.668
1z2c GNPRho-related GTP-binding protein RhoC / 0.667
4xvu ATPATPase GET3 / 0.664
2jiz ANPATP synthase subunit beta, mitochondrial 3.6.3.14 0.663
4yj2 GTPTubulin alpha-1B chain / 0.663
2xtn GTPGTPase IMAP family member 2 / 0.662
3ftq GNPSeptin-2 / 0.660
3ryh GTPTubulin alpha chain / 0.660
2w5a ADPSerine/threonine-protein kinase Nek2 2.7.11.1 0.658
2xul ATPNitrogen regulatory protein P-II / 0.658
2g28 TDKPyruvate dehydrogenase E1 component 1.2.4.1 0.657
2j0s ANPEukaryotic initiation factor 4A-III 3.6.4.13 0.657
2oap ANPType II secretion system protein (GspE-2) / 0.657
4o4l GTPTubulin alpha-1B chain / 0.657
3tgp GNPGTPase HRas / 0.655
3oes GNPGTPase RhebL1 / 0.654
4xvq GNPGTPase HRas / 0.654
5l3r GCPCell division protein FtsY homolog, chloroplastic / 0.654
1rj9 GCPSignal recognition particle receptor FtsY / 0.653
1zw5 ZOLFarnesyl pyrophosphate synthase 2.5.1.10 0.653
2rgg GNPGTPase HRas / 0.653
4prv ADPDNA gyrase subunit B / 0.653
1gwn GTPRho-related GTP-binding protein RhoE / 0.652
2q3f GNPRas-related GTP-binding protein D / 0.652
5ero 210Fusicoccadiene synthase 2.5.1.29 0.652
1esn ANPPantothenate kinase 2.7.1.33 0.650
3lq2 TDPPyruvate dehydrogenase E1 component 1.2.4.1 0.650