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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ynh EUR Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ynh EURGag-Pol polyprotein 2.7.7.49 1.181
2ynf WHUGag-Pol polyprotein 2.7.7.49 0.949
3dya PZLGag-Pol polyprotein 2.7.7.49 0.891
3t19 5MAGag-Pol polyprotein 2.7.7.49 0.817
3drr R8EGag-Pol polyprotein 2.7.7.49 0.784
3tam M06Gag-Pol polyprotein 2.7.7.49 0.770
3drp R8EGag-Pol polyprotein 2.7.7.49 0.758
3di6 PDZGag-Pol polyprotein 2.7.7.49 0.747
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3dol GWIPol protein / 0.733
4h4m 494Gag-Pol polyprotein 2.7.7.49 0.730
3lal KRVGag-Pol polyprotein 2.7.7.49 0.704
3c6t M14Gag-Pol polyprotein 2.7.7.49 0.683
3dlg GWEGag-Pol polyprotein 2.7.7.49 0.670
4e5f 0N7Polymerase acidic protein / 0.660
3dle GFAGag-Pol polyprotein 2.7.7.49 0.658
2won ZZEGag-Pol polyprotein 2.7.7.49 0.655