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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ynf WHU Gag-Pol polyprotein 2.7.7.49

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ynf WHUGag-Pol polyprotein 2.7.7.49 1.119
2ynh EURGag-Pol polyprotein 2.7.7.49 0.949
3dya PZLGag-Pol polyprotein 2.7.7.49 0.883
3t19 5MAGag-Pol polyprotein 2.7.7.49 0.788
3tam M06Gag-Pol polyprotein 2.7.7.49 0.750
3di6 PDZGag-Pol polyprotein 2.7.7.49 0.746
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3ffi 3OBGag-Pol polyprotein 2.7.7.49 0.727
4h4m 494Gag-Pol polyprotein 2.7.7.49 0.698
3drp R8EGag-Pol polyprotein 2.7.7.49 0.695
3dlg GWEGag-Pol polyprotein 2.7.7.49 0.669
4e5f 0N7Polymerase acidic protein / 0.660
3dle GFAGag-Pol polyprotein 2.7.7.49 0.653
2p55 MRADual specificity mitogen-activated protein kinase kinase 1 2.7.12.2 0.652
3lal KRVGag-Pol polyprotein 2.7.7.49 0.651