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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ycw CAU Beta-1 adrenergic receptor

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ycw CAUBeta-1 adrenergic receptor / 1.132
4amj CVDBeta-1 adrenergic receptor / 0.919
5jqh CAUBeta-2 adrenergic receptor / 0.916
3nya JTZBeta-2 adrenergic receptor / 0.899
4bvn P32Beta-1 adrenergic receptor / 0.893
2vt4 P32Beta-1 adrenergic receptor / 0.869
2ycy P32Beta-1 adrenergic receptor / 0.862
4gbr CAUBeta-2 adrenergic receptor / 0.848
5a8e XTKBeta-1 adrenergic receptor / 0.834
2rh1 CAUBeta-2 adrenergic receptor / 0.827
3ny9 JSZBeta-2 adrenergic receptor / 0.822
2ycz I32Beta-1 adrenergic receptor / 0.810
5d5b CAUBeta-2 adrenergic receptor / 0.802
5d6l CAUBeta-2 adrenergic receptor / 0.798
5d5a CAUBeta-2 adrenergic receptor / 0.793
4ldl XQCBeta-2 adrenergic receptor / 0.769
3d4s TIMBeta-2 adrenergic receptor / 0.734
5f8u P32Beta-1 adrenergic receptor / 0.727
4ami G90Beta-1 adrenergic receptor / 0.725
2ycx P32Beta-1 adrenergic receptor / 0.724
2y02 WHJBeta-1 adrenergic receptor / 0.723
2y03 5FWBeta-1 adrenergic receptor / 0.718
3ny8 JRZBeta-2 adrenergic receptor / 0.713
4e5f 0N7Polymerase acidic protein / 0.662
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.660
4e5i 0N9Polymerase acidic protein / 0.660
4lde P0GBeta-2 adrenergic receptor / 0.658
2y04 68HBeta-1 adrenergic receptor / 0.655