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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2ycf YCF Serine/threonine-protein kinase Chk2 2.7.11.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2ycf YCFSerine/threonine-protein kinase Chk2 2.7.11.1 1.069
2w0j ZATSerine/threonine-protein kinase Chk2 2.7.11.1 0.874
2yiq YIQSerine/threonine-protein kinase Chk2 2.7.11.1 0.835
2ycr HCWSerine/threonine-protein kinase Chk2 2.7.11.1 0.808
2ycs NXPSerine/threonine-protein kinase Chk2 2.7.11.1 0.796
2xk9 XK9Serine/threonine-protein kinase Chk2 2.7.11.1 0.795
2w7x D1ASerine/threonine-protein kinase Chk2 2.7.11.1 0.771
2ycq UPXSerine/threonine-protein kinase Chk2 2.7.11.1 0.755
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
4e5f 0N7Polymerase acidic protein / 0.660
3tti KBIMitogen-activated protein kinase 10 2.7.11.24 0.657