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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2y53 NAP 3,4-dehydroadipyl-CoA semialdehyde dehydrogenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2y53 NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 1.229
2vro NDP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.777
2y5d NAP3,4-dehydroadipyl-CoA semialdehyde dehydrogenase / 0.692
3n82 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.676
4pt0 NADAldehyde dehydrogenase / 0.676
1nzz NAIAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.655
1o00 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.655
2onp NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.653
2ehu NAD1-pyrroline-5-carboxylate dehydrogenase / 0.652
2j5n NAD1-pyrroline-5-carboxylate dehydrogenase / 0.652
1o01 NADAldehyde dehydrogenase, mitochondrial 1.2.1.3 0.651
2eii NAD1-pyrroline-5-carboxylate dehydrogenase / 0.651
3iwj NADAminoaldehyde dehydrogenase / 0.651
3rhq NAPCytosolic 10-formyltetrahydrofolate dehydrogenase 1.5.1.6 0.650