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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2xlt NA0 Putative flavin-containing monooxygenase

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2xlt NA0Putative flavin-containing monooxygenase / 1.243
2xlu NA7Putative flavin-containing monooxygenase / 0.870
2xlr NAPPutative flavin-containing monooxygenase / 0.854
2vqb NAPPutative flavin-containing monooxygenase / 0.832
2xlp NAPPutative flavin-containing monooxygenase / 0.770
2vq7 NAPPutative flavin-containing monooxygenase / 0.765
2xvh NAPPutative flavin-containing monooxygenase / 0.737
2xls NAPPutative flavin-containing monooxygenase / 0.732
2c3c NAP2-oxopropyl-CoM reductase, carboxylating 1.8.1.5 0.703
3gwf NAPCyclohexanone monooxygenase / 0.696
2zzc NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.692
4b67 NAPL-ornithine N(5)-monooxygenase / 0.687
4cbq NDPThioredoxin reductase / 0.684
3bhi NAPCarbonyl reductase [NADPH] 1 1.1.1.184 0.682
5idw NAPShort-chain dehydrogenase/reductase SDR / 0.678
3ean NAPThioredoxin reductase 1, cytoplasmic 1.8.1.9 0.674
4a5l NDPThioredoxin reductase / 0.674
4b64 NAPL-ornithine N(5)-monooxygenase / 0.673
4ccq NAPThioredoxin reductase / 0.670
2hk9 ATRShikimate dehydrogenase (NADP(+)) / 0.668
2iyp A2P6-phosphogluconate dehydrogenase, decarboxylating 1.1.1.44 0.667
5cku NAPL-ornithine N(5)-monooxygenase / 0.667
4gcm NAPThioredoxin reductase 1.8.1.9 0.660
4up3 NDPThioredoxin reductase / 0.659
4qec NAPElxO / 0.658
1wp4 NDP3-hydroxyisobutyrate dehydrogenase / 0.657
4b65 NDPL-ornithine N(5)-monooxygenase / 0.655
1nyt NAPShikimate dehydrogenase (NADP(+)) / 0.653
2wba NDPTrypanothione reductase 1.8.1.12 0.653
1lqu NDPNADPH-ferredoxin reductase FprA 1.18.1.2 0.652
1c0k FADD-amino-acid oxidase 1.4.3.3 0.651
2q0k NAPThioredoxin reductase 1.8.1.9 0.650