Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2x21 PID Peridinin-chlorophyll a-binding protein 1, chloroplastic

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2x21 PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.885
2x1z PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.880
2x20 PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.859
3iis PIDPeridinin-chlorophyll a-binding protein 1, chloroplastic / 0.838
1efz PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
1p0e PRFQueuine tRNA-ribosyltransferase 2.4.2.29 0.744
2zue ANPArginine--tRNA ligase 6.1.1.19 0.744
4hut ATPCob(I)yrinic acid a,c-diamide adenosyltransferase 2.5.1.17 0.744
4jjz ADPFormate--tetrahydrofolate ligase / 0.744
4y8v ADPAcyl-CoA synthetase (NDP forming) / 0.744
1wet GUNHTH-type transcriptional repressor PurR / 0.660
2jey HLOAcetylcholinesterase 3.1.1.7 0.660
2puf GUNHTH-type transcriptional repressor PurR / 0.660
4hrq AZGCytidine and deoxycytidylate deaminase zinc-binding region / 0.660