sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2wsa | MYA | Glycylpeptide N-tetradecanoyltransferase |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2wsa | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.760 | |
| 4cgp | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.706 | |
| 5ag4 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.703 | |
| 5ag5 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.702 | |
| 4ucn | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.697 | |
| 5a28 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.696 | |
| 4a32 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.693 | |
| 4a2z | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.687 | |
| 5a27 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.683 | |
| 4a31 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.675 | |
| 2wuu | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.665 | |
| 5ag6 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.664 | |
| 4c2y | MYA | Glycylpeptide N-tetradecanoyltransferase 1 | / | 1.569 | |
| 4a33 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.562 | |
| 4c2z | MYA | Glycylpeptide N-tetradecanoyltransferase 1 | / | 1.547 | |
| 2ync | YNC | Glycylpeptide N-tetradecanoyltransferase | / | 1.541 | |
| 4a95 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.531 | |
| 2yne | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.530 | |
| 4b13 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.519 | |
| 4b12 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.496 | |
| 5ag7 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.489 | |
| 4a30 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 1.487 | |
| 4c68 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.464 | |
| 4bbh | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.452 | |
| 4b14 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.450 | |
| 4b11 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.403 | |
| 4b10 | NHW | Glycylpeptide N-tetradecanoyltransferase | / | 1.371 | |
| 4c2x | NHW | Glycylpeptide N-tetradecanoyltransferase 2 | / | 1.369 | |
| 4cav | MYA | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 1.129 | |
| 2nmt | NHM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 1.069 | |
| 4cax | MYA | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 1.045 | |
| 1iid | NHM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 0.946 | |
| 4qbj | NHM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 0.929 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.719 | |
| 3fbu | COA | Acetyltransferase, GNAT family | / | 0.711 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.710 | |
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.706 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.680 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.667 | |
| 1i9h | BNI | Streptavidin | / | 0.664 | |
| 1rxh | BNI | Streptavidin | / | 0.659 | |
| 3gph | OID | Cytochrome P450 2E1 | 1.14.13 | 0.658 | |
| 1swd | BTN | Streptavidin | / | 0.654 | |
| 3akn | 11D | Fatty acid-binding protein, intestinal | / | 0.654 | |
| 4fw4 | 3P3 | UDP-3-O-acyl-N-acetylglucosamine deacetylase | / | 0.654 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.653 | |
| 1sqv | UHD | Cytochrome b | / | 0.651 | |
| 1qsn | COA | HAT A1 | / | 0.650 |