2.850 Å
X-ray
2004-03-19
Name: | Cytochrome b |
---|---|
ID: | CYB_BOVIN |
AC: | P00157 |
Organism: | Bos taurus |
Reign: | Eukaryota |
TaxID: | 9913 |
EC Number: | / |
Chain Name: | Percentage of Residues within binding site |
---|---|
C | 100 % |
B-Factor: | 31.076 |
---|---|
Number of residues: | 30 |
Including | |
Standard Amino Acids: | 30 |
Non Standard Amino Acids: | 0 |
Water Molecules: | 0 |
Cofactors: | |
Metals: |
Ligandability | Volume (Å3) |
---|---|
1.851 | 479.250 |
% Hydrophobic | % Polar |
---|---|
78.87 | 21.13 |
According to VolSite |
HET Code: | UHD |
---|---|
Formula: | C18H24NO3S |
Molecular weight: | 334.453 g/mol |
DrugBank ID: | DB04799 |
Buried Surface Area: | 56.6 % |
Polar Surface area: | 98.33 Å2 |
Number of | |
---|---|
H-Bond Acceptors: | 4 |
H-Bond Donors: | 0 |
Rings: | 2 |
Aromatic rings: | 1 |
Anionic atoms: | 1 |
Cationic atoms: | 0 |
Rule of Five Violation: | 0 |
Rotatable Bonds: | 10 |
X | Y | Z |
---|---|---|
71.6999 | 54.5233 | 165.981 |
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
Ligand | Protein | Interaction | |||
---|---|---|---|---|---|
Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
C18 | CD2 | LEU- 121 | 3.78 | 0 | Hydrophobic |
C12 | CE | MET- 124 | 4.44 | 0 | Hydrophobic |
C14 | CE | MET- 124 | 3.84 | 0 | Hydrophobic |
C17 | CB | ALA- 125 | 3.85 | 0 | Hydrophobic |
O4 | OH | TYR- 131 | 2.97 | 125.92 | H-Bond (Protein Donor) |
S1 | CB | TRP- 141 | 4.2 | 0 | Hydrophobic |
S1 | CG2 | VAL- 145 | 4.26 | 0 | Hydrophobic |
C8 | CG1 | ILE- 146 | 3.58 | 0 | Hydrophobic |
C15 | CG2 | ILE- 146 | 4.36 | 0 | Hydrophobic |
C11 | CD1 | ILE- 146 | 4 | 0 | Hydrophobic |
C13 | CD1 | ILE- 146 | 3.76 | 0 | Hydrophobic |
S1 | CG1 | ILE- 268 | 3.88 | 0 | Hydrophobic |
C9 | CG | PRO- 270 | 3.94 | 0 | Hydrophobic |
C11 | CG | PHE- 274 | 3.45 | 0 | Hydrophobic |
C13 | CZ | PHE- 274 | 4.31 | 0 | Hydrophobic |
C9 | CB | PHE- 274 | 3.75 | 0 | Hydrophobic |
C10 | CB | ALA- 277 | 4.4 | 0 | Hydrophobic |
C10 | CD1 | LEU- 294 | 4.49 | 0 | Hydrophobic |