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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wq7 FAD RE11660p

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wq7 FADRE11660p / 1.421
2wq6 FADRE11660p / 1.375
3cvu FADRE11660p / 1.353
3cvy FADRE11660p / 1.319
2wb2 FADRE11660p / 1.111
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 1.052
4jzy FADCryptochrome-1 / 0.993
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.983
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.983
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.972
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.967
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.963
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.963
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.948
1u3d FADCryptochrome-1 / 0.948
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.944
4i6g FADCryptochrome-2 / 0.937
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.920
1u3c FADCryptochrome-1 / 0.909
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.909
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.904
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.891
4gu5 FADCryptochrome-1 / 0.875
1np7 FADCryptochrome DASH / 0.866
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.863
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.862
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.858
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.844
4cdm FADDeoxyribodipyrimidine photolyase / 0.809
4dja FAD(6-4) photolyase / 0.798
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.720
2vqd AP2Biotin carboxylase 6.3.4.14 0.700
3tw6 ADPPyruvate carboxylase / 0.700
2io8 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.691
4ffl ADPUncharacterized protein / 0.687
3rv4 ADPBiotin carboxylase 6.3.4.14 0.685
2p0a ANPSynapsin-3 / 0.680
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.675
2ioa ADPBifunctional glutathionylspermidine synthetase/amidase / 0.670
1t6y FMNRiboflavin biosynthesis protein / 0.668
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.668
1nb9 RBFRiboflavin kinase 2.7.1.26 0.665
5e9e ANPMyosin heavy chain kinase A 2.7.11.7 0.663
4iwx ADPRibosomal protein S6--L-glutamate ligase / 0.662
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.660
2io9 ADPBifunctional glutathionylspermidine synthetase/amidase / 0.658
1p4m FMNRiboflavin kinase 2.7.1.26 0.657
3lla ACPMyosin heavy chain kinase A 2.7.11.7 0.657
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.657
2r7n ADP5-formaminoimidazole-4-carboxamide-1-(beta)-D-ribofuranosyl 5'-monophosphate synthetase / 0.655
2zdg ADPD-alanine--D-alanine ligase / 0.655
5c1o ANPD-alanine--D-alanine ligase / 0.655
3t9e ADPInositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 / 0.653
1m0w ANPGlutathione synthetase 6.3.2.3 0.652
3pdt ADPMyosin heavy chain kinase A 2.7.11.7 0.652
3lmh ADPMyosin heavy chain kinase A 2.7.11.7 0.651
3vkj FNRIsopentenyl-diphosphate delta-isomerase / 0.651