Logo scPDB

sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

Logo CNRS Logo Unistra
Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wq6 FAD RE11660p

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wq6 FADRE11660p / 1.441
2wq7 FADRE11660p / 1.375
3cvu FADRE11660p / 1.334
3cvy FADRE11660p / 1.301
2wb2 FADRE11660p / 1.164
2j4d FADCryptochrome DASH, chloroplastic/mitochondrial / 1.057
1owo FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.006
1owp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 1.006
4i6g FADCryptochrome-2 / 0.992
1iqr FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.974
4jzy FADCryptochrome-1 / 0.971
1dnp FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.963
1owm FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.950
1own FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.950
2vtb FADCryptochrome DASH, chloroplastic/mitochondrial / 0.950
1u3c FADCryptochrome-1 / 0.947
1tez FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.942
1u3d FADCryptochrome-1 / 0.942
2j09 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.939
1owl FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.938
1qnf FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.917
2j07 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.913
2j08 FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.876
2ijg FADCryptochrome DASH, chloroplastic/mitochondrial / 0.873
1np7 FADCryptochrome DASH / 0.870
4gu5 FADCryptochrome-1 / 0.862
3umv FADDeoxyribodipyrimidine photo-lyase 4.1.99.3 0.855
4dja FAD(6-4) photolyase / 0.847
3zxs FADDeoxyribodipyrimidine photolyase-related protein / 0.811
4cdm FADDeoxyribodipyrimidine photolyase / 0.798
4c5c ATPD-alanine--D-alanine ligase B 6.3.2.4 0.685
4c5b ADPD-alanine--D-alanine ligase B 6.3.2.4 0.671
1nb9 RBFRiboflavin kinase 2.7.1.26 0.668
1z2n ADPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.667
1i0s FMNFerric-chelate reductase (NAD(P)H) / 0.658
4bby FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.657
4bc7 FADAlkyldihydroxyacetonephosphate synthase, peroxisomal 2.5.1.26 0.657
2vqd AP2Biotin carboxylase 6.3.4.14 0.656
2zfa FMNLactate oxidase / 0.656
3mzi FMNActivator of photopigment and puc expression / 0.655
1z2p ACPInositol-tetrakisphosphate 1-kinase 2.7.1.134 0.654
3hgr FMN12-oxophytodienoate reductase 1 1.3.1.42 0.653