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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wi2 ZZ3 Heat shock protein HSP 90-alpha

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wi2 ZZ3Heat shock protein HSP 90-alpha / 0.787
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
4e5i 0N9Polymerase acidic protein / 0.744
3ft5 MO8Heat shock protein HSP 90-alpha / 0.730
4egi B2JHeat shock protein HSP 90-alpha / 0.728
2yej ZZ3Heat shock protein HSP 90-alpha / 0.702
2wi1 ZZ2Heat shock protein HSP 90-alpha / 0.684
3ft8 MOJHeat shock protein HSP 90-alpha / 0.674
3vha VHAHeat shock protein HSP 90-alpha / 0.671
3r4n FU5Heat shock protein HSP 90-alpha / 0.666
2qfo A13Heat shock protein HSP 90-alpha / 0.665
3omu IBDHeat shock protein 83 / 0.661
3vjo ANPEpidermal growth factor receptor 2.7.10.1 0.654