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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2wd2 MS5 Carbonic anhydrase 2 4.2.1.1

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2wd2 MS5Carbonic anhydrase 2 4.2.1.1 1.014
3d9z D9ZCarbonic anhydrase 2 4.2.1.1 0.757
1jd0 AZMCarbonic anhydrase 12 4.2.1.1 0.737
3v2j AZMCarbonic anhydrase 2 4.2.1.1 0.721
3dcc D9ZCarbonic anhydrase 2 4.2.1.1 0.707
3mna DWHCarbonic anhydrase 2 4.2.1.1 0.695
2h4n AZMCarbonic anhydrase 2 4.2.1.1 0.691
3dc3 AZMCarbonic anhydrase 2 4.2.1.1 0.688
3mmf D9HCarbonic anhydrase 2 4.2.1.1 0.679
3daz MZMCarbonic anhydrase 2 4.2.1.1 0.678
2h15 B19Carbonic anhydrase 2 4.2.1.1 0.677
2q1q OSPCarbonic anhydrase 2 4.2.1.1 0.677
3dbu D8WCarbonic anhydrase 2 4.2.1.1 0.676
3kig DA4Carbonic anhydrase 2 4.2.1.1 0.675
4kap 1QVCarbonic anhydrase 2 4.2.1.1 0.673
1if4 FBSCarbonic anhydrase 2 4.2.1.1 0.669
3nb5 R21Carbonic anhydrase 2 4.2.1.1 0.669
4iwz 1GOCarbonic anhydrase 2 4.2.1.1 0.667
1rj6 AZMCarbonic anhydrase 14 4.2.1.1 0.665
3eft 3BSCarbonic anhydrase 2 4.2.1.1 0.665
4ito MPXCarbonic anhydrase 2 4.2.1.1 0.665
4xiw AZMCarbonic anhydrase, alpha type / 0.664
3mhc ARZCarbonic anhydrase 2 4.2.1.1 0.661
3fw3 ETSCarbonic anhydrase 4 4.2.1.1 0.660
4lu3 AZMCarbonic anhydrase 14 4.2.1.1 0.658
4k0t D9ZCarbonic anhydrase 2 4.2.1.1 0.656
2weg FBVCarbonic anhydrase 2 4.2.1.1 0.655
2eu3 FF3Carbonic anhydrase 2 4.2.1.1 0.651
4uov AZMCarbonate dehydratase / 0.651
1bnt AL2Carbonic anhydrase 2 4.2.1.1 0.650
4k13 ETSCarbonic anhydrase 2 4.2.1.1 0.650