sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2vxo | XMP | GMP synthase [glutamine-hydrolyzing] | 6.3.5.2 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2vxo | XMP | GMP synthase [glutamine-hydrolyzing] | 6.3.5.2 | 1.066 | |
| 3uow | XMP | GMP synthase [glutamine-hydrolyzing] | / | 0.797 | |
| 1pr0 | NOS | Purine nucleoside phosphorylase DeoD-type | / | 0.665 | |
| 3uf6 | COD | Lmo1369 protein | / | 0.659 | |
| 3fow | IMH | Purine nucleoside phosphorylase | / | 0.656 | |
| 4dae | 6CR | Purine nucleoside phosphorylase DeoD-type | 2.4.2.1 | 0.655 | |
| 2zfi | ADP | Kinesin-like protein KIF1A | / | 0.652 | |
| 4pan | GDP | Guanine nucleotide-binding protein G(i) subunit alpha-1 | / | 0.651 | |
| 3jxe | TYM | Tryptophan--tRNA ligase | / | 0.650 |