2.720 Å
X-ray
2011-11-17
| Name: | GMP synthase [glutamine-hydrolyzing] |
|---|---|
| ID: | Q8IJR9_PLAF7 |
| AC: | Q8IJR9 |
| Organism: | Plasmodium falciparum |
| Reign: | Eukaryota |
| TaxID: | 36329 |
| EC Number: | / |
| Chain Name: | Percentage of Residues within binding site |
|---|---|
| A | 10 % |
| B | 90 % |
| B-Factor: | 47.107 |
|---|---|
| Number of residues: | 21 |
| Including | |
| Standard Amino Acids: | 21 |
| Non Standard Amino Acids: | 0 |
| Water Molecules: | 0 |
| Cofactors: | |
| Metals: | |
| Ligandability | Volume (Å3) |
|---|---|
| 1.054 | 968.625 |
| % Hydrophobic | % Polar |
|---|---|
| 45.99 | 54.01 |
| According to VolSite | |

| HET Code: | XMP |
|---|---|
| Formula: | C10H11N4O9P |
| Molecular weight: | 362.190 g/mol |
| DrugBank ID: | DB02309 |
| Buried Surface Area: | 48.37 % |
| Polar Surface area: | 207.94 Å2 |
| Number of | |
|---|---|
| H-Bond Acceptors: | 10 |
| H-Bond Donors: | 4 |
| Rings: | 3 |
| Aromatic rings: | 1 |
| Anionic atoms: | 2 |
| Cationic atoms: | 0 |
| Rule of Five Violation: | 1 |
| Rotatable Bonds: | 4 |
| X | Y | Z |
|---|---|---|
| -10.5792 | 32.4615 | 43.8378 |
Image generated by PoseView
Represent the protein/ligand binding mode, centered on the ligand
Dashed lines represents hydrogen bonds and metal interactions
Green residue labels for amino acids with hydrophobic contacts (green lines) to the ligand
| Ligand | Protein | Interaction | |||
|---|---|---|---|---|---|
| Atom | Atom | Residue | Distance (Å) | Angle (°) | Type |
| O6 | NH1 | ARG- 336 | 3.07 | 154.72 | H-Bond (Protein Donor) |
| O2 | N | GLY- 435 | 2.94 | 158.61 | H-Bond (Protein Donor) |
| O2' | NE2 | GLN- 476 | 2.84 | 158.54 | H-Bond (Protein Donor) |
| O3' | NE2 | GLN- 476 | 3.17 | 123.38 | H-Bond (Protein Donor) |
| O1P | NZ | LYS- 547 | 3.24 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 547 | 2.74 | 0 | Ionic (Protein Cationic) |
| O2P | NZ | LYS- 547 | 2.74 | 160.4 | H-Bond (Protein Donor) |
| O2P | N | ILE- 552 | 2.73 | 166.07 | H-Bond (Protein Donor) |
| C3' | CD1 | ILE- 552 | 3.75 | 0 | Hydrophobic |
| O3P | N | GLU- 553 | 2.73 | 161.18 | H-Bond (Protein Donor) |
| C2' | CG | GLU- 553 | 3.69 | 0 | Hydrophobic |
| O2' | OE2 | GLU- 553 | 3.13 | 166.84 | H-Bond (Ligand Donor) |