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sc-PDB

An Annotated Database of Druggable Binding Sites from the Protein DataBank

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Distribution of Interaction pattern similarity measured by Grim
You can zoom onto the graph by using the mouse to make a selection

Binding Modes are compared using Grim.
For more information, please see the following publication: Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65


Reference Protein Data Bank Entry :
PDB ID HET Uniprot Name EC Number
2vo0 M03 cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11

Complex with similar interaction patterns:

PDB ID HET Uniprot Name EC Number Binding Mode
Similarity		 Align
2vo0 M03cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 1.040
2vnw M01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.876
2vo3 M04cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.781
2vo6 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.760
1g7u PEP2-dehydro-3-deoxyphosphooctonate aldolase 2.5.1.55 0.744
2vo7 M05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.741
2uvz GVJcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.703
4xw4 ANPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.689
3mvj XFEcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.688
3cqw CQWRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.686
1sve I01cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.681
1xh6 R94cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.681
1veb I05cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
1xh8 R55cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.679
1phk ATPPhosphorylase b kinase gamma catalytic chain, skeletal muscle/heart isoform 2.7.11.19 0.678
4iay ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.678
4dh5 ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.674
4ifc ADPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.672
3x2v ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.667
1xh5 R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.662
1j1c ADPGlycogen synthase kinase-3 beta 2.7.11.26 0.660
4e5f 0N7Polymerase acidic protein / 0.660
4im0 1FVSerine/threonine-protein kinase TBK1 2.7.11.1 0.660
2ijm ADPFocal adhesion kinase 1 2.7.10.2 0.658
2qoc ANPEphrin type-A receptor 3 2.7.10.1 0.658
3mv5 XFERAC-alpha serine/threonine-protein kinase 2.7.11.1 0.658
4xw5 ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.658
2ijm ATPFocal adhesion kinase 1 2.7.10.2 0.656
3x2w ATPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.656
4ekk ANPRAC-alpha serine/threonine-protein kinase 2.7.11.1 0.655
1svh I08cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.654
4iir ANPSerine/threonine-protein kinase PRP4 homolog 2.7.11.1 0.654
4iac ACPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.653
4iak ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
4jik 1KOSerine/threonine-protein kinase Chk1 2.7.11.1 0.652
4wbb ADPcAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.652
1xha R68cAMP-dependent protein kinase catalytic subunit alpha 2.7.11.11 0.651
2j0l ANPFocal adhesion kinase 1 2.7.10.2 0.651