sc-PDB
An Annotated Database of Druggable Binding Sites from the Protein DataBank
An Annotated Database of Druggable Binding Sites from the Protein DataBank
Binding Modes are compared using Grim.
For more information, please see the following publication:
Desaphy J. et al. Encoding Protein-Ligand Interaction Patterns in Fingerprints and Graphs J. Chem. Inf. Model., 2013, 53 (3), pp 623-637
Binding modes are considered as similar when the similarity value is greater than 0.65
| PDB ID | HET | Uniprot Name | EC Number |
|---|---|---|---|
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 |
| PDB ID | HET | Uniprot Name | EC Number | Binding Mode Similarity |
Align |
|---|---|---|---|---|---|
| 2vbq | BSJ | Aminoglycoside N(6')-acetyltransferase type 1 | / | 1.725 | |
| 1s3z | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 1.034 | |
| 1s5k | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 1.023 | |
| 3pgp | ACO | Uncharacterized protein | / | 0.817 | |
| 1s60 | COA | Aminoglycoside N(6')-acetyltransferase type 1 | / | 0.808 | |
| 4kvx | ACO | N-terminal acetyltransferase A complex catalytic subunit ard1 | 2.3.1.88 | 0.800 | |
| 1n71 | COA | Aac(6')-Ii protein | / | 0.796 | |
| 4crz | ACO | PanD regulatory factor | / | 0.786 | |
| 5kf1 | ACO | Predicted acetyltransferase | / | 0.784 | |
| 2jdd | ACO | Probable acetyltransferase | / | 0.781 | |
| 2b3v | ACO | Diamine acetyltransferase 1 | / | 0.773 | |
| 4cs0 | ACO | PanD regulatory factor | / | 0.769 | |
| 4kub | COA | Uncharacterized protein | / | 0.760 | |
| 3sxn | COA | N-acetyltransferase Eis | / | 0.754 | |
| 4ag7 | COA | Glucosamine 6-phosphate N-acetyltransferase | / | 0.753 | |
| 5kf8 | ACO | Predicted acetyltransferase | / | 0.751 | |
| 5kgj | ACO | Predicted acetyltransferase | / | 0.751 | |
| 4mxe | ACO | N-acetyltransferase ESCO1 | 2.3.1 | 0.749 | |
| 3te4 | ACO | Dopamine N-acetyltransferase | / | 0.746 | |
| 5kgp | ACO | Predicted acetyltransferase | / | 0.746 | |
| 2a4n | COA | Aac(6')-Ii protein | / | 0.743 | |
| 1ozp | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.737 | |
| 5kf2 | ACO | Predicted acetyltransferase | / | 0.735 | |
| 3mgd | ACO | Predicted acetyltransferase | / | 0.729 | |
| 2psw | COA | N-alpha-acetyltransferase 50 | / | 0.723 | |
| 3d2m | COA | Amino-acid acetyltransferase | / | 0.722 | |
| 4cry | ACO | PanD regulatory factor | / | 0.721 | |
| 1pua | COA | HAT A1 | / | 0.717 | |
| 2fxf | ACO | Diamine acetyltransferase 1 | / | 0.711 | |
| 4zm6 | ACO | N-acetyl-beta-D glucosaminidase | / | 0.710 | |
| 1qsm | ACO | Histone acetyltransferase HPA2 | / | 0.708 | |
| 4lx9 | ACO | N-alpha-acetyltransferase | 2.3.1 | 0.708 | |
| 4r3k | COA | N-alpha-acetyltransferase | 2.3.1 | 0.708 | |
| 5kf1 | COA | Predicted acetyltransferase | / | 0.708 | |
| 2wsa | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.706 | |
| 5kf9 | ACO | Predicted acetyltransferase | / | 0.704 | |
| 1ghe | ACO | Acetyltransferase | 2.3.1 | 0.703 | |
| 2giv | ACO | Histone acetyltransferase KAT8 | / | 0.703 | |
| 2ou2 | ACO | Histone acetyltransferase KAT5 | / | 0.699 | |
| 1m4d | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.697 | |
| 2ozu | ACO | Histone acetyltransferase KAT6A | / | 0.697 | |
| 5kgh | ACO | Predicted acetyltransferase | / | 0.697 | |
| 1m4i | COA | Aminoglycoside 2'-N-acetyltransferase | 2.3.1 | 0.696 | |
| 4ucn | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.694 | |
| 3s6f | COA | Uncharacterized protein | / | 0.691 | |
| 3vwe | COA | Alpha-tubulin N-acetyltransferase 1 | / | 0.691 | |
| 1pu9 | COA | HAT A1 | / | 0.689 | |
| 1ib1 | COT | Serotonin N-acetyltransferase | / | 0.685 | |
| 4ua3 | COA | N-alpha-acetyltransferase 40 | 2.3.1 | 0.684 | |
| 1cjw | COT | Serotonin N-acetyltransferase | / | 0.676 | |
| 4ava | ACO | Acetyltransferase Pat | 2.3.1 | 0.675 | |
| 5h86 | BCO | Histone acetyltransferase KAT2A | 2.3.1.48 | 0.675 | |
| 1j4j | ACO | Acetyltransferase | 2.3.1 | 0.673 | |
| 3exn | ACO | Probable acetyltransferase | / | 0.673 | |
| 2c27 | ACO | Mycothiol acetyltransferase | 2.3.1.189 | 0.670 | |
| 2nmt | NHM | Glycylpeptide N-tetradecanoyltransferase | 2.3.1.97 | 0.668 | |
| 3ryo | ACO | N-acetyltransferase Eis | / | 0.668 | |
| 2zpa | ACO | tRNA(Met) cytidine acetyltransferase TmcA | / | 0.666 | |
| 5kf9 | COA | Predicted acetyltransferase | / | 0.666 | |
| 1mjb | ACO | Histone acetyltransferase ESA1 | / | 0.665 | |
| 3dr8 | ACO | L-methionine sulfoximine/L-methionine sulfone acetyltransferase | / | 0.665 | |
| 2cns | ACO | Ribosomal-protein-alanine acetyltransferase | / | 0.662 | |
| 2vzz | SCA | Putative succinyl-CoA transferase Rv0802c | 2.8.3 | 0.662 | |
| 2y0m | ACO | Histone acetyltransferase KAT8 | / | 0.662 | |
| 1mj9 | COA | Histone acetyltransferase ESA1 | / | 0.659 | |
| 3r95 | ACO | MccE protein | / | 0.658 | |
| 1s7n | COA | Acetyl transferase | / | 0.656 | |
| 5ag7 | MYA | Glycylpeptide N-tetradecanoyltransferase | / | 0.656 | |
| 1fy7 | COA | Histone acetyltransferase ESA1 | / | 0.655 | |
| 4ri1 | ACO | UDP-4-amino-4,6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase | 2.3.1.202 | 0.654 | |
| 1mja | COA | Histone acetyltransferase ESA1 | / | 0.652 |